Grain-free apple muffins with a crunchy Maple Cinnamon Walnut Streusel topping! Made with a winning combination of almond flour and tapioca flour with lots of apple chunks in every bite, these healthy paleo muffins can also be made sugar-free.
These Grain-Free Apple Muffins with Maple Cinnamon Streusel could be ready for your morning coffee or afternoon snack today! I know you'll love these muffins. I've made four batches in the last week or two, testing to get the recipe just right, and we're not tired of them at all!
These soft and tender grain-free muffins are made with almond flour and a little tapioca flour for texture. They're sweetened with your choice of granulated sweetener: coconut sugar, brown sugar, or Golden Monkfruit sweetener (I've tried them all.)
Best of all, they're filled with apple chunks in every moist little bite!
Top these grain-free apple muffins with this amazing apple cinnamon walnut streusel for extra sweetness and crunch.
And to make them even more special, add a drizzle of vanilla glaze to that crumb topping once they've cooled--if you can wait that long!
Ready to make your kitchen smell amazing? Here's what you'll need to make these grain-free apple muffins.
🛒 Ingredients
Wet ingredients:
melted butter or coconut oil, eggs and pure vanilla extract
sweetener: your choice of granulated sweetener: coconut sugar, brown sugar, or Golden Monkfruit sweetener. The muffins in the photo were made with Monkfruit sweetener.
Dry ingredients:
almond flour (finely ground) and tapioca flour to help bind and give the muffins that perfect slight chew.
cinnamon, baking powder, salt and lemon zest
Streusel topping: almond flour, chopped walnuts, granulated sweetener and maple syrup
Optional Vanilla Glaze: confectioner's sugar, vanilla, cream or milk
🔪 Instructions
Here's an overview of how to make these grain-free apple muffins with maple cinnamon streusel. Complete instructions are in the recipe card below.
- Start by combining all streusel topping ingredients and set this mixture aside.
- Combine the wet ingredients in a medium bowl and the dry ingredients in a large bowl
- Add the wet ingredients to the dry ingredients, then gently stir in the diced apples.
- The batter will be very thick. Divide the batter evenly between the muffin cups. A large cookie scoop works well for this job. Top each with 2- 3 teaspoons of streusel mixture.
- Bake for 18-20 minutes or until toothpick comes out clean.
- Cool completely before glazing with optional Vanilla Glaze.
🔁 Possible Variations
Substitute your favourite nuts for the walnuts in the streusel topping. Pecans are also delicous.
The glaze is optional (but good!) The muffins are absolutely delicious and moist without it if you want to leave it off.
I tried these apple muffins with a lemon glaze, but I found it overpowered the apple cinnamon flavour.
🥶 Storage and freezing instructions
These apple streusel muffins will stay fresh in a container at room temperature for 3-4 days. For longer storage, you may want to refrigerate or freeze them. Freeze in a covered container, lined with a sheet of paper towel both underneath and on top of the muffins for up to 3 months.
For more information about the best way to store muffins, see this article from the Kitchn, The Best Way to Store Muffins and Quick Breads.

Apple Muffins with Maple Cinnamon Streusel
Ingredients
- 2 cups almond flour, finely ground
- ½ cup tapioca starch
- 1 tbsp ground cinnamon
- ½ tsp sea salt
- 2 tsp baking powder
- 1 tbsp lemon zest, finely grated
- ¼ cup coconut oil or butter, melted
- ½ cup granulated sweetener, Golden Monkfruit, coconut sugar, or brown sugar
- 2 large eggs
- 1 tsp pure vanilla extract
- 1 ½ cups apples, peeled, cored and finely diced
Maple Cinnamon Streusel Topping
- ¼ cup almond flour
- 1 tsp ground cinnamon
- ½ cup walnuts, finely chopped
- 1 pinch sea salt
- 2 tbsp granulated sweetener, Golden Monkfruit, coconut sugar, or brown sugar
- 1 tbsp + 1 tsp maple syrup
Optional Vanilla Glaze
- ½ cup confectioner's sugar or powdered Monkfruit or Swerve
- 1 ½ tbsp heavy cream, milk or plant-based milk
- ½ tsp pure vanilla extract
Instructions
Streusel Topping
- In a small bowl, combine all streusel topping ingredients. Set aside.
Apple Muffins
- Heat oven to 350°F.
- Line muffin tins with paper or silicone liners.
- In a medium bowl, combine melted butter (or coconut oil), sweetener, eggs and vanilla.
- In a large bowl, combine almond flour, tapioca flour, cinnamon, salt, baking powder and lemon zest.
- Add the wet ingredients to the dry ingredients, then gently stir in the diced apples.
- The batter will be thick. Divide the batter evenly between the muffin cups. Top each with 2- 3 teaspoons of streusel mixture, pressing it gently into the batter.
- Bake for 18-20 minutes or until toothpick comes out clean.
- Cool completely before glazing with optional Vanilla Glaze.
Vanilla Glaze
- Combine powdered sweetener with vanilla and cream, one teaspoon at a time until you've achieved desired consistency. The glaze should be just runny enough to spread.
Notes
Nutrition
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JustineCelina says
Yum! Elaine, these muffins look absolutely delicious and perfectly autumnal. I love the warm, cozy feeling of these images as well. Beautiful work!
Flavour & Savour says
Thanks so much, Justine!
dishnthekitchen says
These are such great looking muffins...so light and fluffy. I've never cooked with tapioca flour before. but I think it's a great idea to pair it with another flour such as almond.
Flavour & Savour says
Thanks Bernice, you're right--they're very light. I'm loving this combination of almond flour with a little tapioca in my baking lately!
Colleen says
Delicious looking, seasonal muffins, Elaine! I have yet to try monkfruit sweetener, but now I plan to look into it. Thanks for the info!
Flavour & Savour says
Thanks Colleen, I've used it almost exclusively for over a year now. It's pricey, but it's much more affordable at Costco.
Vanessa says
The perfect muffin for Fall. Looks delicious but also healthy enough to have for breakfast!
Flavour & Savour says
Thanks Vanessa!
Wanda says
These muffins look delicious! Love a good streusel topping on muffins and I can't wait to try them!
Flavour & Savour says
Thanks so much, Wanda! I know you'll love them!
Lisa says
These muffins look so delicious and perfect to nibble on with a hot cuppa tea on a fall day...perfect scene, right? Thanks for sharing this recipe!
Kristen says
I love apple season and these muffins are why. So incredibly delicious, can’t wait to make them again.
Flavour & Savour says
Thanks so much, Kristen! So glad they're a favourite with you, too!
Sharon says
You aren't lying about the house smelling amazing!! I loved these with the monkfruit sweetener for a low sugar treat.
Flavour & Savour says
Thanks Sharon! I love Monkfruit as a sugar substitute, and I use it in all my baking now!