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    Home » Baking Recipes » Muffins and Loaves » Gluten-Free Double Chocolate Zucchini Muffins

    Gluten-Free Double Chocolate Zucchini Muffins

    Published: Jun 10, 2023 · Updated: Apr 28, 2024 by Elaine - 10 Comments

    Jump to Recipe Print Recipe

    Wondering what to do with extra zucchini? Full of rich chocolate flavour and studded with chocolate chips, these Gluten-Free Double Chocolate Zucchini Muffins are a great way to use summer squash! Made with a gluten-free flour blend, coconut sugar and Greek yogurt, these nut-free chocolate zucchini muffins are super moist, tender and insanely delicious.

    Overhead view of double chocolate zucchini muffins topped with extra chocolate chips.

    When zucchini season is upon us in full force and you're searching for ways to use it up, see 8 Delicious Zucchini Recipes Ideas. But wait: What better way could there be to enjoy zucchini than with a Gluten-Free Double Chocolate Zucchini Muffin? Or two!

    I love the texture zucchini gives baked goods. While it keeps them moist and tender, it doesn't impart any strong zucchini flavour. It simply, and very kindly, contributes all its nutritious benefits to a lowly muffin!

    I make these grain-free Zucchini Banana Muffins and Double Chocolate Zucchini Bread often during zucchini season, but these chocolate zucchini muffins are a family favourite!

    Why you'll love this zucchini muffin recipe

    • Made with 3 cups of zucchini, this is a great way to hide a healthy vegetable into a treat! No, you can't taste the zucchini.
    • I make these gluten-free chocolate zucchini muffins with oil instead of butter or coconut oil. No need to melt and cool butter! A light oil gives these muffins a tender crumb.
    • Using a combination of granulated sugar and coconut sugar (or brown sugar) gives a slightly deliciously chewy texture.
    • Zucchini muffins made with yogurt rise and have a nicely domed top.
    • Using both cocoa and chocolate chips gives a rich chocolate flavour.
    • Nut-free chocolate zucchini muffins are ideal for your friends with nut allergies.
    • Studded with chocolate chips on top, these muffins are rich and fancy enough for dessert!
    Jump to:
    • Why you'll love this zucchini muffin recipe
    • 🛒 Ingredients
    • 👍🏼Helpful tips
    • 🔪 Instructions
    • 🥶How to store and freeze muffins
    • 🗒 More gluten-free muffin recipes!
    • Did you make this recipe?
    • 📖 Recipe

    🛒 Ingredients

    Gather your ingredients! Here's what you'll need to make these super moist chocolate zucchini muffins.

    • gluten-free all-purpose flour mix: I've tested this recipe with both Bob's Red Mill 1 to 1 Gluten-free Baking Mix and Cup4Cup Gluten-free Baking Mix
    • salt
    • baking soda
    • cocoa powder: one of the two "chocolates" in double chocolate!
    • granulated sugar
    • coconut sugar or brown sugar: gives lots of caramel flavour and a slightly chewy texture
    • eggs: for a boost of protein. For best mixing, make sure your eggs are at room temperature
    • light vegetable oil: like avocado oil or sunflower oil.
    • pure vanilla extract
    • Greek yogurt: or you can use a plant-based yogurt to keep this recipe dairy-free
    • zucchini: very well-drained. Zucchini adds lots of moisture to these muffins, so shred it up and squeeze out as much extra moisture from the zucchini juices as you can.
    • semi-sweet chocolate chips: Use dairy-free chocolate chips, if necessary
    Ingredients for gluten-free double chocolate zucchini muffins.

    👍🏼Helpful tips

    1. I've tested this recipe with both Bob's Red Mill Gluten-Free 1-to-1 Baking Flour and Cup4Cup Gluten-Free Flour Blend. I've tried many gluten-free flour blends in the past, but I have had the most success with these two. They both contain xanthan gum, so you don't need to add it yourself.
    2. I lowered the sugar content a little by using half coconut sugar (with a lower glycemic index) and half granulated sugar.
    3. Adding Greek yogurt to the batter along with baking soda helps the muffins to rise beautifully. It also improves the texture. (Use coconut yogurt for a dairy-free muffin.)
    4. Thoroughly drain the grated zucchini by squeezing it in cheesecloth or a clean tea towel. Removing the excess water will prevent the muffins from being soggy.
    5. Stir the chocolate chips into the batter. Save a few extra chocolate chips to press into the top of the muffins before baking.
    Close up view of a hand holding a single gluten-free double chocolate zucchini muffin.

    🔪 Instructions

    These Gluten-Free Double Chocolate Zucchini Muffins are easy to bake.

    Follow a standard muffin method for success every time. Whisk the dry ingredients, mix the wet ingredients, add the shredded, drained zucchini and yogurt, and stir until just combined.  Gently fold in the chocolate chips, saving a few to press into the top of each muffin.

    Bake in a muffin pan, cool slightly and add a slather of butter if you like!

    Wet and dry ingredients for chocolate zucchini muffins in a glass bowl with a spatula.
    1. In a large bowl, whisk dry ingredients, beat wet ingredients, then combine the two.
    Adding zucchini and yogurt to muffin batter.
    2. Stir in yogurt, drained zucchini and chocolate chips.
    Chocolate zucchini muffins in a muffin pan.
    3. Fill muffin liners in a muffin tin and top each muffin with chocolate chips.
    Baked double chocolate zucchini muffins in a muffin tin.
    4. Bake for 22-26 minutes.
    Gluten-free chocolate zucchini muffins on a board.

    🥶How to store and freeze muffins

    These gluten-free zucchini muffins will stay fresh in a container on the counter for a day or two. For longer storage, keep them covered in the fridge in an airtight container.

    Muffins freeze well when you wrap them individually or when stored in a covered container lined with a paper towel. They will last in the freezer for up to 3 months.

    🗒 More gluten-free muffin recipes!

    • slices of glazed cranberry orange bread
      Gluten-Free Cranberry Orange Bread with Orange Glaze
    • Overhead view of a black serving dish with mini Broccoli Cheese Muffins
      Mini Gluten-Free Broccoli Cheese Muffins
    • Square image of mini gluten-free pumpkin muffins with chocolate chips.
      Mini Chocolate Chip Pumpkin Muffins -Gluten-Free
    • overhead view of gluten-free Zucchini Banana Muffins in muffin tin
      Healthy Zucchini Banana Muffins - Grain-free
    See more Muffins and Loaves →

    Did you make this recipe?

    When you make these chocolate zucchini muffins with oil, please leave a comment and a star rating below. I love hearing from you! Subscribe to my newsletter and have new recipes delivered straight to your inbox.

    📖 Recipe

    Side view of a gluten-free double chocolate zucchini muffin.

    Gluten-Free Double Chocolate Zucchini Muffins

    Full of chocolate flavour and studded with chocolate chips, these Gluten-Free Double Chocolate Zucchini Muffins are a great way to use up extra zucchini squash!
    Print Pin Rate
    Course: Breakfast and Brunch, Muffins
    Cuisine: American, Canadian
    Diet: Gluten Free, Vegetarian
    Prep Time: 15 minutes minutes
    Cook Time: 25 minutes minutes
    Total Time: 40 minutes minutes
    Servings: 14 muffins
    Calories: 244kcal
    Author: Elaine
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    Equipment

    12-cup muffin pan
    spatula
    whisk
    mixing bowl

    Ingredients

    • 2 cups gluten-free all purpose flour mix
    • 1 ⅕ teaspoon xanthan gum *, only use if your GF flour mix doesn't contain xanthan gum or guar gum
    • ½ teaspoon sea salt
    • 1 ½ teaspoon baking soda
    • ½ cup cocoa powder
    • ½ cup granulated sugar
    • ¼ cup coconut sugar, or brown sugar
    • 2 large eggs, at room temperature
    • ½ cup light vegetable oil
    • 1 teaspoon pure vanilla extract
    • ½ cup Greek yogurt
    • 3 cups grated zucchini, well drained* see note below
    • ¾ cup chocolate chips* save some to press into muffin tops before baking. Use dairy-free if necessary.

    Instructions

    • Preheat oven to 350°F. Line a 12-cup muffin tins with culinary paper liners.
    • Whisk gluten-free flour, xanthan gum (if using), salt, baking soda and cocoa in a medium bowl.
    • Mix vegetable oil, both types of sugar, room temperature eggs, and vanilla in a large bowl or in the bowl of a stand mixer. Beat until fluffy. Gently stir in yogurt and grated and well-drained zucchini. Stir dry ingredients into batter just until combined.
    • Fold in chocolate chips, saving some to press into the tops of the muffins before baking.
    • Fill muffin cups ¾ full. Bake at 350°F for 20 - 26 minutes or until toothpick inserted comes out clean. Cool 10 minutes, then transfer to wire rack to cool completely. Remove the paper liners.

    Notes

    Remove most of the excess moisture from the zucchini by thoroughly squeezing it in cheesecloth or a clean tea towel before adding it to the batter.

    Nutrition

    Calories: 244kcal | Carbohydrates: 31g | Protein: 5g | Fat: 13g | Saturated Fat: 4g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 6g | Trans Fat: 0.003g | Cholesterol: 27mg | Sodium: 240mg | Potassium: 188mg | Fiber: 4g | Sugar: 14g | Vitamin A: 97IU | Vitamin C: 5mg | Calcium: 62mg | Iron: 1mg
    Tried this Recipe? Pin it for Later!Mention @enessman or tag #flavourandsavour!

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    Reader Interactions

    Comments

    1. Gabby

      August 04, 2023 at 6:18 am

      This is the best, GF, chocolate zucchini muffin ever! We can’t make enough before they’re all gone again!

      Reply
      • Elaine

        August 04, 2023 at 8:10 pm

        Thanks so much! I love this recipe too. Happy to hear they've been a hit in your home.

        Reply
    2. C

      July 09, 2023 at 3:58 pm

      How do I measure the three cups of shredded zucchini? Should I do that before I have drained/squeezed it, or after?

      Reply
      • Elaine

        July 10, 2023 at 10:52 am

        Thanks for your question. I measure it after I have drained it.

        Reply
    3. Clara

      August 07, 2021 at 9:54 am

      Can I use buttermilk instead of yogurt if I don't have any yogurt? Or sour cream maybe?

      Reply
      • Elaine

        August 07, 2021 at 2:14 pm

        Hi Clara, Sour cream would be a good substitute for yogurt.

        Reply
    4. Crystal

      August 31, 2020 at 2:01 pm

      Amazing! My kids loved them. Better than chocolate cake

      Reply
      • Flavour & Savour

        August 31, 2020 at 6:24 pm

        That's great news! Thanks for taking the time to let me know!

        Reply
    5. Dierdre

      September 05, 2018 at 8:43 pm

      5 stars
      My son loves these muffins! I think it's a great way to add some vegetables into a sweet treat. He likes all those chocolate chips on top, too!

      Reply
      • Flavour & Savour

        September 05, 2018 at 9:09 pm

        We love these too! Lots of chocolate, but healthy zucchini too! Thanks for letting me know!

        Reply
    5 from 1 vote

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    Gluten-free Made Easy!

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