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    Home » Baking Recipes » Muffins and Loaves » Mini Chocolate Chip Pumpkin Muffins -Gluten-Free

    Mini Chocolate Chip Pumpkin Muffins -Gluten-Free

    Published: Sep 11, 2023 · Updated: Sep 23, 2023 by Elaine - 5 Comments

    Jump to Recipe Print Recipe

    These gluten-free mini chocolate chip pumpkin muffins made with almond flour are tiny treats for a taste of fall. Enjoy the cozy flavors of pumpkin spice in every bite – perfect for satisfying your autumn cravings! They're allergen-friendly, gluten-free and dairy-free.

    Mini gluten-free dairy-free chocolate chip pumpkin muffins on a white serving dish.

    This recipe was inspired by my favorite gluten-free almond flour pumpkin muffin recipe. Making two-bite muffins, (and then adding chocolate chips) keeps the kids (and the kid in all of us) happy.

    ❤️ Why you'll love this recipe

    • gluten-free: Made with my favorite combination of almond flour and tapioca flour, these muffins are allergen-friendly. They're gluten-free and dairy-free.
    • two-bite muffins: They're perfect for a Thanksgiving or Hallowe'en dessert platter, or a kids Hallowe'en party!
    • a healthier after-school snack
    • delicious: These soft, moist, fluffy muffins are packed with chocolate chips!
    • An easy recipe: No mixer needed, just bowls, a whisk, a spatula, and a muffin tin!
    Jump to:
    • ❤️ Why you'll love this recipe
    • 🛒 Ingredients
    • 🔪 Instructions
    • 👍🏼 Helpful Tip
    • 🔁 Substitutions and Variations
    • ❓ FAQ's
    • 🕑 How to store mini pumpkin muffins
    • 🎃 More pumpkin recipes!
    • 🗒 More Halloween treats
    • 🌟 Did you make this recipe?
    • 📖 Recipe

    🛒 Ingredients

    Here are the ingredients you'll need to make these mini pumpkin muffins. You'll find a complete list with quantities in the recipe card below.

    Labelled dry ingredients for mini almond flour pumpkin muffins with chocolate chips.

    Labelled wet ingredients for mini chocolate chip pumpkin muffins.

    • blanched almond flour, finely ground
    • tapioca flour, also called tapioca starch
    • pumpkin spice mix, for homemade pumpkin pie spice, see Notes in the recipe card.
    • baking powder, gluten-free
    • sea salt or Kosher salt
    • large eggs, at room temperature
    • pumpkin purée: homemade or canned
    • coconut sugar, or brown sugar
    • coconut oil, or butter, melted
    • pure vanilla extract
    • chocolate chips, dairy-free

    And if you have leftover pumpkin purée after opening a can, check this collection of Smart Ideas for Leftover Pumpkin Purée. They're all gluten-free, (even the Pumpkin Peanut Butter Dog Treats!)

    🔪 Instructions

    Here are step-by-step instructions to make the best mini pumpkin muffins. You'll find detailed directions in the recipe card below.

    Dry ingredients for mini pumpkin chocolate chip muffins in a glass mixing bowl.
    1. Whisk dry ingredients together.
    Wet ingredients for gluten-free pumpkin muffins in a glass bowl with a whisk.

    2. Add the wet ingredients and stir until well combined and no traces of flour remain.

    Mini chocolate chip pumpkin muffin batter in muffin tin.
    3. Use a small cookie scoop to fill mini muffin cups ⅔ full. This recipe will make 32 mini muffins or 24 mini muffins and 4 large muffins.
    mini gluten-free chocolate chip pumpkin muffins closeup
    4. Bake until a toothpick comes out clean. Cool completely on a wire rack.

    👍🏼 Helpful Tip

    Muffin liners allow for easy removal and storage. Use Halloween or Thanksgiving-themed mini muffin liners just for fun!

    Mini Chocolate Chip Pumpkin Muffin on a cupcake stand.

    🔁 Substitutions and Variations

    Keep these mini muffins dairy-free: Use coconut oil instead of butter and choose dairy-free chocolate chips like Enjoy Life Semi-Sweet Mini Chocolate Chips.

    ❓ FAQ's

    How do you keep mini muffins moist?

    To make sure your mini muffins turn out soft, fluffy and moist, don't overbake them. Remove them from the oven when a toothpick inserted in the center comes out clean.

    Can I substitute a different flour for almond flour?

    No. This recipe has been tested several times with a combination of almond flour and tapioca flour. I don't recommend substituting a different type of flour.

    Closeup view of mini gluten-free pumpkin muffins with chocolate chips in Halloween cupcake cases.

    🕑 How to store mini pumpkin muffins

    To store: Store at room temperature in a covered container for 3 - 4 days. After that, transfer them to the fridge.

    To freeze: For longer storage, freeze these muffins for up to 3 months in an airtight container. You could also wrap them and freeze them individually to pack in a daypack or lunch box for healthy snacks.

    🎃 More pumpkin recipes!

    • Square image of pumpkin pecan caramel coffee cake.
      Gluten-Free Pumpkin Pecan Coffee Cake with Caramel Sauce
    • slices of gluten free pumpkin spice bread
      Pumpkin Spice Bread - Gluten-free
    • A small black plate with four gluten-free pumpkin pecan chocolate chip cookies.
      One-Bowl Gluten-Free Pumpkin Cookies with Pecans and Chocolate Chips
    • Square image of four pumpkin oat squares with chocolate chips.
      Pumpkin Chocolate Chip Oat Bars - Gluten-Free

    🗒 More Halloween treats

    • A small dessert glass with chocolate pudding and gummy worms.
      Dairy-Free Dirt and Worms Pudding Cups
    • Chocolate cashew clusters on a plate.
      Sweet and Sea Salty Chocolate Cashews
    • close up view of pumpkin spice almond cookies drizzled with chocolate
      Pumpkin Spice Shortbread Cookies with Almond Flour
    • Homemade peanut butter dog treats in a pile.
      Pumpkin Peanut Butter Dog Treats (Gluten-Free)
    See more Halloween →

    🌟 Did you make this recipe?

    When you make this mini pumpkin muffin recipe, please leave a comment and a star rating below. I love hearing how my recipes turned out for you. Subscribe to my newsletter and have new recipes delivered straight to your inbox.

    📖 Recipe

    Square image of mini gluten-free pumpkin muffins with chocolate chips.

    Mini Chocolate Chip Pumpkin Muffins

    These mini chocolate chip pumpkin muffins are dairy-free and gluten-free. They're tiny two-bite soft and fluffy pumpkin muffins generously studded with chocolate chips.
    Print Pin Rate
    Course: Breakfast and Brunch, Muffins
    Cuisine: American
    Diet: Gluten Free
    Prep Time: 15 minutes minutes
    Cook Time: 15 minutes minutes
    Total Time: 30 minutes minutes
    Servings: 32
    Calories: 265kcal
    Author: Elaine
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    Equipment

    1 mini muffin pan
    1 small cookie scoop
    glass mixing bowls
    whisk
    spatula

    Ingredients

    Gluten-free Pumpkin Muffins

    • 2 cups almond flour, finely ground
    • ½ cup tapioca flour, also called tapioca starch
    • 1 tablespoon pumpkin spice mix, see Notes
    • 2 teaspoons baking powder, gluten-free
    • ½ teaspoon sea salt or Kosher salt
    • 2 large eggs, at room temperature
    • ½ cup pumpkin purée, not pie filling
    • ¾ cup coconut sugar, or brown sugar
    • ¼ cup coconut oil, or butter, melted
    • 1 teaspoon pure vanilla extract
    • chocolate chips, dairy-free

    Instructions

    • Preheat oven to 350°F. LIne a 24-cup muffin tin and either 4 regular-sized muffin tin with culinary or parchment paper liners.
    • In a large bowl, measure and whisk the dry ingredients together: almond flour, tapioca flour, baking powder, pumpkin spice mix and salt.
    • In a medium bowl, whisk the eggs, then add pumpkin purée, sugar, melted coconut oil and vanilla extract. Mix until well combined.
    • Use a spatula or spoon to combine the wet ingredients with the dry ingredients, stirring just until combined.
    • Gently stir in the chocolate chips, reserving a few to place on top of each mini muffin.
    • Use a spoon or a cookie scoop to divide the batter evenly into the lined muffin cups.
    • Top each muffin with 2 or 3 chocolate chips.
    • Bake for 15-17 minutes or until toothpick inserted in the center of a muffin comes out clean. Let sit in the muffin pan for 5 - 10 minutes, then remove to a cooling rack to cool completely.

    Notes

    To make your own Pumpkin Spice Mix, combine:
    • 3 tablespoons cinnamon
    • 2 tablespoons ground ginger
    • 2 tablespoons ground nutmeg
    • 1 ½ tablespoons ground allspice
    • 1 ½ tablespoons ground cloves
    Store in a small jar. You'll need 1 tablespoon of this mix to make these pumpkin muffins.
    Note: This recipe makes 32 mini muffins or 24 mini muffins and 4 large muffins.

    Nutrition

    Calories: 265kcal | Carbohydrates: 23g | Protein: 6g | Fat: 19g | Saturated Fat: 5g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 0.003g | Cholesterol: 31mg | Sodium: 137mg | Potassium: 126mg | Fiber: 3g | Sugar: 10g | Vitamin A: 1638IU | Vitamin C: 1mg | Calcium: 90mg | Iron: 1mg
    Tried this Recipe? Pin it for Later!Mention @enessman or tag #flavourandsavour!

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    Reader Interactions

    Comments

    1. Brit

      October 31, 2023 at 7:28 pm

      5 stars
      I made these, your witch's broomsticks, monster cookies, and worms and dirt recipes for my daughter's Halloween party. Lots of fun!

      Reply
      • Elaine

        October 31, 2023 at 9:05 pm

        That's great to hear! Thanks for letting me know!

        Reply
    2. Laura

      September 21, 2023 at 8:03 pm

      5 stars
      I made a batch of the pumpkin spice mix and have loved having it handy! Tasty muffins!

      Reply
      • Elaine

        October 09, 2023 at 6:01 pm

        Happy to hear you loved these! Thanks for your kind review!

        Reply
    3. Lana

      September 21, 2023 at 8:02 pm

      5 stars
      Love these! Tastes like fall! Having them as mini muffins is super cute.

      Reply
    5 from 3 votes

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